The Gnome Chemistry Utils  0.12.11
Public Member Functions
gcp::ReactionStep Class Reference

the list of reactants before or after a reaction arrow. More...

#include <gcp/reaction-step.h>

Inheritance diagram for gcp::ReactionStep:
gcp::MechanismStep gcu::Object

List of all members.

Public Member Functions

 ReactionStep ()
virtual ~ReactionStep ()
 ReactionStep (Reaction *reaction, std::map< double, gcu::Object * > &Children, std::map< gcu::Object *, gccv::Rect > Objects) throw (std::invalid_argument)
xmlNodePtr Save (xmlDocPtr xml) const
bool Load (xmlNodePtr node)
double GetYAlign ()
bool OnSignal (gcu::SignalId Signal, gcu::Object *Child)
void AddArrow (ReactionArrow *arrow)
void RemoveArrow (ReactionArrow *arrow)
std::string Name ()
void AddMolecule (Molecule *molecule, bool signal=true)
- Public Member Functions inherited from gcp::MechanismStep
 MechanismStep (gcu::TypeId type=MechanismStepType)
virtual ~MechanismStep ()
- Public Member Functions inherited from gcu::Object
 Object (TypeId Id=OtherType)
virtual ~Object ()
TypeId GetType () const
void SetId (gchar const *Id)
gchar const * GetId () const
virtual void AddChild (Object *object)
ObjectGetMolecule () const
ObjectGetReaction () const
ObjectGetGroup () const
DocumentGetDocument () const
ObjectGetParentOfType (TypeId Id) const
ObjectGetChild (const gchar *Id) const
ObjectGetFirstChild (std::map< std::string, Object * >::iterator &i)
ObjectGetNextChild (std::map< std::string, Object * >::iterator &i)
ObjectGetDescendant (const gchar *Id) const
ObjectGetParent () const
void SetParent (Object *Parent)
virtual void Move (double x, double y, double z=0.)
virtual void Transform2D (Matrix2D &m, double x, double y)
bool SaveChildren (xmlDocPtr xml, xmlNodePtr node) const
void SaveId (xmlNodePtr node) const
xmlNodePtr GetNodeByProp (xmlNodePtr node, char const *Property, char const *Id)
xmlNodePtr GetNextNodeByProp (xmlNodePtr node, char const *Property, char const *Id)
xmlNodePtr GetNodeByName (xmlNodePtr node, char const *Name)
xmlNodePtr GetNextNodeByName (xmlNodePtr node, char const *Name)
bool HasChildren () const
unsigned GetChildrenNumber () const
virtual ObjectGetAtomAt (double x, double y, double z=0.)
virtual bool Build (std::list< Object * > &Children) throw (std::invalid_argument)
virtual bool BuildContextualMenu (GtkUIManager *UIManager, Object *object, double x, double y)
void EmitSignal (SignalId Signal)
void Lock (bool state=true)
bool IsLocked ()
ObjectGetFirstLink (std::set< Object * >::iterator &i)
ObjectGetNextLink (std::set< Object * >::iterator &i)
void Link (Object *object)
void Unlink (Object *object)
virtual void OnUnlink (Object *object)
void GetPossibleAncestorTypes (std::set< TypeId > &types) const
virtual bool SetProperty (unsigned property, char const *value)
virtual std::string GetProperty (unsigned property) const
virtual void OnLoaded ()
void SetDirty (bool dirty=true)
virtual void Clear ()
std::string Identity ()
virtual char const * HasPropertiesDialog () const
void ShowPropertiesDialog ()
bool GetDirty (void) const

Detailed Description

the list of reactants before or after a reaction arrow.

The ReactionStep class is a group class which owns a list of reactants and the operators betwwen them. This class is misnamed, since the step is more generally associated with the arrow. It might be renamed ReactionStage in the future if it is possible without making old files unreadable.

Definition at line 49 of file reaction-step.h.


Constructor & Destructor Documentation

gcp::ReactionStep::ReactionStep ( )

The default constructor.

virtual gcp::ReactionStep::~ReactionStep ( )
virtual

The destructor.

gcp::ReactionStep::ReactionStep ( Reaction reaction,
std::map< double, gcu::Object * > &  Children,
std::map< gcu::Object *, gccv::Rect Objects 
) throw (std::invalid_argument)
Parameters:
reactionthe parent reaction.
Childrenthe reactants from which to build the new instance.
Objectsthe rectangles bounding the reactants.

Buils a new reaction step from the children and adds as many eaction operators as necessary. All children will be horizontally aligned.


Member Function Documentation

void gcp::ReactionStep::AddArrow ( ReactionArrow arrow)
inline
Parameters:
arrowan arrow related to this instance.

Adds an arrow to the list of arrows related to this instance.

Definition at line 106 of file reaction-step.h.

void gcp::ReactionStep::AddMolecule ( Molecule molecule,
bool  signal = true 
)
Parameters:
moleculea molecule.
signalwheter to emit the OnChangedSignal

Adds amolecue to this step.

double gcp::ReactionStep::GetYAlign ( )
virtual

Used to retrieve the y coordinate for alignment.

Returns:
y coordinate used for the reaction step alignment.

Reimplemented from gcp::MechanismStep.

bool gcp::ReactionStep::Load ( xmlNodePtr  node)
virtual
Parameters:
node,:a pointer to the xmlNode containing the serialized step.

Used to load a reaction step in memory.

Returns:
true on succes, false otherwise.

Reimplemented from gcp::MechanismStep.

std::string gcp::ReactionStep::Name ( )
virtual
Returns:
the localized object generic name.

Reimplemented from gcp::MechanismStep.

bool gcp::ReactionStep::OnSignal ( gcu::SignalId  Signal,
gcu::Object Child 
)
virtual
Parameters:
Signalthe appropriate SignalId
Childthe child which emitted the signal or NULL

This function is called by the framework when a signal has been emitted for the reaction step, when one of its children changed. It should not be called by a program; call Object::EmitSignal instead.

Returns:
true if the signal should be propagated to the parent, false otherwise.

Reimplemented from gcp::MechanismStep.

void gcp::ReactionStep::RemoveArrow ( ReactionArrow arrow)
Parameters:
arrowan arrow related to this instance.

Removes an arrow from the list of arrows related to this instance when it not anymore relevant.

xmlNodePtr gcp::ReactionStep::Save ( xmlDocPtr  xml) const
virtual
Parameters:
xmlthe xmlDoc used to save the document.

Used to save the reaction step to the xmlDoc.

Returns:
the xmlNode containing the serialized step.

Reimplemented from gcp::MechanismStep.


The documentation for this class was generated from the following file: